CIdata                  Confidence-Interval for the Mean of the Poisson
                        Distribution
LRCUSUM.runlength       Run length computation of a CUSUM detector
[-methods               Methods for "[": Extraction or Subsetting in
                        Package 'surveillance'
abattoir                Abattoir Data
aggregate,sts,ANY,ANY-method
                        Aggregate the the series of an sts object
aggregate.disProg       Aggregate the observed counts
algo.bayes              The Bayes System
algo.call               Query Transmission to Specified Surveillance
                        Systems
algo.cdc                The CDC Algorithm
algo.compare            Comparison of Specified Surveillance Systems
                        using Quality Values
algo.cusum              CUSUM method
algo.farrington         Surveillance for a time series using the
                        Farrington procedure.
algo.farrington.assign.weights
                        Assign weights to base counts
algo.farrington.fitGLM
                        Fit the Poisson GLM of the Farrington procedure
                        for a single time point
algo.farrington.threshold
                        Threshold computations using a two sided
                        confidence interval
algo.glrnb              Cound data regression charts
algo.glrpois            Poisson regression charts
algo.hhh                Model fit based on the Held, Hoehle, Hofman
                        paper
algo.hhh.grid           Function to try multiple starting values
algo.hmm                Hidden Markov Model (HMM) method
algo.outbreakP          Semiparametric surveillance of outbreaks
algo.quality            Computation of Quality Values for a
                        Surveillance System Result
algo.rki                The system used at the RKI
algo.rogerson           Modified CUSUM method as proposed by Rogerson
                        and Yamada (2004)
algo.summary            Summary Table Generation for Several Disease
                        Chains
algo.twins              Model fit based on a two-component epidemic
                        model
anscombe.residuals      Compute Anscombe residuals
arlCusum                Calculation of Average Run Length for discrete
                        CUSUM schemes
bestCombination         Partition of a number into two factors
categoricalCUSUM        CUSUM detector for time-varying categorical
                        time series
compMatrix.writeTable   Latex Table Generation
correct53to52           Data Correction from 53 to 52 weeks
create.disProg          Creating an object of class disProg
create.grid             Computes a matrix of initial values
deleval                 Surgical failures data
disProg2sts             Convert disProg object to sts and vice versa
enlargeData             Data Enlargement
estimateGLRNbHook       Hook function for in-control mean estimation
estimateGLRPoisHook     Hook function for in-control mean estimation
find.kh                 Determine the k and h values in a standard
                        normal setting
findH                   Find decision interval for given in-control ARL
                        and reference value
findK                   Find reference value
ha                      Hepatitis A in Berlin
hepatitisA              Hepatitis A in Germany
influMen                Influenza and meningococcal infections in
                        Germany, 2001-2006
isoWeekYear             Find ISO week and ISO year of a vector of Date
                        objects
loglikelihood           Calculation of the loglikelihood needed in
                        algo.hhh
m1                      RKI SurvStat Data
magic.dim               Returns a suitable k1 x k2 for plotting the
                        disProgObj
make.design             Create the design matrices
makePlot                Plot Generation
meanResponse            Calculate mean response needed in algo.hhh
measles.weser           Measles epidemics in Lower Saxony in 2001-2002
meningo.age             Meningococcal infections in France 1985-1995
momo                    Danish 1994-2008 all cause mortality data for
                        six age groups
observed-methods        Methods
obsinyear-methods       ~~ Methods for Function obsinyear ~~
pairedbinCUSUM          Paired binary CUSUM and its run-length
                        computation
plot                    Display Methods for Surveillance Time-Series
                        Objects
plot.atwins             Plot results of a twins model fit
plot.disProg            Plot Generation of the Observed and the defined
                        Outbreak States of a (multivariate) time series
plot.survRes            Plot a survRes object
predict.ah              Predictions from a HHH model
primeFactors            Prime number factorization
print.algoQV            Print quality value object
readData                Reading of Disease Data
refvalIdxByDate         Compute indices of reference value using Date
                        class
residuals.ah            Residuals from a HHH model
salmonella.agona        Salmonella Agona cases in the UK 1990-1995
shadar                  Salmonella Hadar cases in Germany 2001-2006
sim.pointSource         Generation of Simulated Point Source Epidemy
sim.seasonalNoise       Generation of Background Noise for Simulated
                        Timeseries
simHHH                  Simulates data based on the model proposed by
                        Held et. al (2005)
stcd                    Spatio-temporal cluster detection
sts-class               Class "sts" - surveillance time series
sumNeighbours           Calculates the sum of counts of adjacent areas
surveillance-package    Outbreak detection algorithms for surveillance
                        data
test                    Print xtable for several diseases and the
                        summary
testSim                 Print xtable for a Simulated Disease and the
                        Summary
toFileDisProg           Writing of Disease Data
wrap.algo               Multivariate Surveillance through independent
                        univariate algorithms
xtable.algoQV           Xtable quality value object
year-methods            Methods for Function year
