Ifpack2_SparsityFilter_def.hpp

/*@HEADER
// ***********************************************************************
//
//       Ifpack2: Templated Object-Oriented Algebraic Preconditioner Package
//                 Copyright (2009) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are
// met:
//
// 1. Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
//
// 2. Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
//
// 3. Neither the name of the Corporation nor the names of the
// contributors may be used to endorse or promote products derived from
// this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY SANDIA CORPORATION "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
// PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL SANDIA CORPORATION OR THE
// CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
// PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
// NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
// SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
//@HEADER
*/
 
#ifndef IFPACK2_SPARSITYFILTER_DEF_HPP
#define IFPACK2_SPARSITYFILTER_DEF_HPP
 
#include "Tpetra_Map.hpp"
#include "Tpetra_MultiVector.hpp"
#include "Tpetra_Vector.hpp"
 
#include <algorithm>
#include <vector>
 
namespace Ifpack2 {
 
//==========================================================================
template<class MatrixType>
SparsityFilter<MatrixType>::SparsityFilter(const Teuchos::RCP<const Tpetra::RowMatrix<Scalar,LocalOrdinal,GlobalOrdinal,Node> >& Matrix,
                                           size_t AllowedNumEntries,
                                           LocalOrdinal AllowedBandwidth):
  A_(Matrix),
  AllowedNumEntries_(AllowedNumEntries),
  AllowedBandwidth_(AllowedBandwidth),
  NumRows_(0),
  NumNonzeros_(0),
  MaxNumEntries_(0),
  MaxNumEntriesA_(0)
{
 
 // use this filter only on serial matrices
  TEUCHOS_TEST_FOR_EXCEPTION(
    A_->getComm()->getSize() != 1 || A_->getNodeNumRows() != A_->getGlobalNumRows(),
    std::runtime_error, "Ifpack2::SparsityFilter: "
    "This class may only be used when A.getComm()->getSize() == 1.");
 
  // localized matrix has all the local rows of Matrix
  NumRows_ = A_->getNodeNumRows();
 
  // NodeNumEntries_ will contain the actual number of nonzeros
  // for each localized row (that is, without external nodes,
  // and always with the diagonal entry)
  NumEntries_.resize(NumRows_);
 
  // tentative value for MaxNumEntries. This is the number of
  // nonzeros in the local matrix
  MaxNumEntries_  = A_->getNodeMaxNumRowEntries();
  MaxNumEntriesA_ = A_->getNodeMaxNumRowEntries();
 
  // ExtractMyRowCopy() will use these vectors
  Indices_.resize(MaxNumEntries_);
  Values_.resize(MaxNumEntries_);
 
  size_t ActualMaxNumEntries = 0;
  for (size_t i = 0 ; i < NumRows_ ; ++i) {
    NumEntries_[i] = MaxNumEntriesA_;
    size_t Nnz;
    A_->getLocalRowCopy(i,Indices_,Values_,Nnz);
 
    NumNonzeros_ += Nnz;
    NumEntries_[i] = Nnz;
    if (Nnz > ActualMaxNumEntries)
      ActualMaxNumEntries = Nnz;
  }
 
  MaxNumEntries_ = ActualMaxNumEntries;
}
 
//=========================================================================
template<class MatrixType>
SparsityFilter<MatrixType>::~SparsityFilter() { }
 
//==========================================================================
template<class MatrixType>
Teuchos::RCP<const Teuchos::Comm<int> > SparsityFilter<MatrixType>::getComm() const
{
  return A_->getComm();
}
 
#ifdef TPETRA_ENABLE_DEPRECATED_CODE
//==========================================================================
template<class MatrixType>
TPETRA_DEPRECATED
Teuchos::RCP <typename MatrixType::node_type> SparsityFilter<MatrixType>::getNode() const
{
  return Teuchos::null;
}
#endif // TPETRA_ENABLE_DEPRECATED_CODE
 
//==========================================================================
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type,
                               typename MatrixType::global_ordinal_type,
                               typename MatrixType::node_type> >
SparsityFilter<MatrixType>::getRowMap() const
{
  return A_->getRowMap();
}
 
//==========================================================================
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type,
                               typename MatrixType::global_ordinal_type,
                               typename MatrixType::node_type> >
SparsityFilter<MatrixType>::getColMap() const
{
  return A_->getColMap();
}
 
//==========================================================================
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type,
                               typename MatrixType::global_ordinal_type,
                               typename MatrixType::node_type> >
SparsityFilter<MatrixType>::getDomainMap() const
{
  return A_->getDomainMap();
}
 
//==========================================================================
template<class MatrixType>
Teuchos::RCP<const Tpetra::Map<typename MatrixType::local_ordinal_type,
                               typename MatrixType::global_ordinal_type,
                               typename MatrixType::node_type> >
SparsityFilter<MatrixType>::getRangeMap() const
{
  return A_->getRangeMap();
}
 
//==========================================================================
template<class MatrixType>
Teuchos::RCP<const Tpetra::RowGraph<typename MatrixType::local_ordinal_type,
                                     typename MatrixType::global_ordinal_type,
                                     typename MatrixType::node_type> >
SparsityFilter<MatrixType>::getGraph() const
{
  throw std::runtime_error("Ifpack2::SparsityFilter: does not support getGraph.");
}
 
//==========================================================================
template<class MatrixType>
global_size_t SparsityFilter<MatrixType>::getGlobalNumRows() const
{
  return NumRows_;
}
 
//==========================================================================
template<class MatrixType>
global_size_t SparsityFilter<MatrixType>::getGlobalNumCols() const
{
  return NumRows_;
}
 
//==========================================================================
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getNodeNumRows() const
{
  return NumRows_;
}
 
//==========================================================================
 
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getNodeNumCols() const
{
  return NumRows_;
}
 
//==========================================================================
template<class MatrixType>
typename MatrixType::global_ordinal_type SparsityFilter<MatrixType>::getIndexBase() const
{
  return A_->getIndexBase();
}
 
//==========================================================================
template<class MatrixType>
global_size_t SparsityFilter<MatrixType>::getGlobalNumEntries() const
{
  return NumNonzeros_;
}
 
//==========================================================================
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getNodeNumEntries() const
{
  return NumNonzeros_;
}
 
//==========================================================================
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getNumEntriesInGlobalRow(GlobalOrdinal /* globalRow */) const
{
  throw std::runtime_error("Ifpack2::SparsityFilter does not implement getNumEntriesInGlobalRow.");
}
 
//==========================================================================
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getNumEntriesInLocalRow(LocalOrdinal localRow) const
{
  return NumEntries_[localRow];
}
 
//==========================================================================
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getGlobalMaxNumRowEntries() const
{
  return MaxNumEntries_;
}
 
//==========================================================================
template<class MatrixType>
size_t SparsityFilter<MatrixType>::getNodeMaxNumRowEntries() const
{
  return MaxNumEntries_;
}
 
//==========================================================================
template<class MatrixType>
bool SparsityFilter<MatrixType>::hasColMap() const
{
  return true;
}
 
//==========================================================================
template<class MatrixType>
bool SparsityFilter<MatrixType>::isLocallyIndexed() const
{
  return A_->isLocallyIndexed();
}
 
//==========================================================================
template<class MatrixType>
bool SparsityFilter<MatrixType>::isGloballyIndexed() const
{
  return A_->isGloballyIndexed();
}
 
//==========================================================================
template<class MatrixType>
bool SparsityFilter<MatrixType>::isFillComplete() const
{
  return A_->isFillComplete();
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::getGlobalRowCopy(GlobalOrdinal /* GlobalRow */,
                                                  const Teuchos::ArrayView<GlobalOrdinal> &/* Indices */,
                                                  const Teuchos::ArrayView<Scalar> &/* Values */,
                                                  size_t &/* NumEntries */) const
{
  throw std::runtime_error("Ifpack2::SparsityFilter does not implement getGlobalRowCopy.");
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::getLocalRowCopy(LocalOrdinal LocalRow,
                                              const Teuchos::ArrayView<LocalOrdinal> &Indices,
                                              const Teuchos::ArrayView<Scalar> &Values,
                                              size_t &NumEntries) const
{
  TEUCHOS_TEST_FOR_EXCEPTION((LocalRow < 0 || (size_t) LocalRow >=  NumRows_ || (size_t) Indices.size() <  NumEntries_[LocalRow]), std::runtime_error, "Ifpack2::SparsityFilter::getLocalRowCopy invalid row or array size.");
 
  // Note: This function will work correctly if called by apply, say, with Indices_ and Values_ as
  // parameters.  The structure of the loop below should make that obvious.
 
  // always extract using the object Values_ and Indices_.
  // This is because I need more space than that given by
  // the user (for the external nodes)
  size_t A_NumEntries=0;
  A_->getLocalRowCopy(LocalRow,Indices_(),Values_(),A_NumEntries);
  magnitudeType Threshold = Teuchos::ScalarTraits<magnitudeType>::zero();
  std::vector<magnitudeType> Values2(A_NumEntries,Teuchos::ScalarTraits<magnitudeType>::zero());
 
  if (A_NumEntries > AllowedNumEntries_) {
    size_t count = 0;
    for (size_t i = 0 ; i < A_NumEntries ; ++i) {
      // skip diagonal entry (which is always inserted)
      if (Indices_[i] == LocalRow)
        continue;
      // put magnitude
      Values2[count] = Teuchos::ScalarTraits<Scalar>::magnitude(Values_[i]);
      count++;
    }
 
    // sort in descending order
    std::sort(Values2.rbegin(),Values2.rend());
    // get the cut-off value
    Threshold = Values2[AllowedNumEntries_ - 1];
  }
 
 
  // loop over all nonzero elements of row MyRow,
  // and drop elements below specified threshold.
  // Also, add value to zero diagonal
  NumEntries = 0;
  for (size_t i = 0 ; i < A_NumEntries ; ++i) {
    if (std::abs(Indices_[i] - LocalRow) > AllowedBandwidth_)
      continue;
 
    if ((Indices_[i] != LocalRow) && (Teuchos::ScalarTraits<Scalar>::magnitude(Values_[i]) < Threshold))
      continue;
 
    Values[NumEntries] = Values_[i];
    Indices[NumEntries] = Indices_[i];
 
    NumEntries++;
    if (NumEntries > AllowedNumEntries_)
      break;
  }
 
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::getGlobalRowView(GlobalOrdinal /* GlobalRow */,
                                                  Teuchos::ArrayView<const GlobalOrdinal> &/* indices */,
                                                  Teuchos::ArrayView<const Scalar> &/* values */) const
{
  throw std::runtime_error("Ifpack2::SparsityFilter: does not support getGlobalRowView.");
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::getLocalRowView(LocalOrdinal /* LocalRow */,
                                                 Teuchos::ArrayView<const LocalOrdinal> &/* indices */,
                                                 Teuchos::ArrayView<const Scalar> &/* values */) const
{
  throw std::runtime_error("Ifpack2::SparsityFilter: does not support getLocalRowView.");
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::getLocalDiagCopy(Tpetra::Vector<Scalar,LocalOrdinal,GlobalOrdinal,Node> &diag) const
{
  // This is somewhat dubious as to how the maps match.
  return A_->getLocalDiagCopy(diag);
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::leftScale(const Tpetra::Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node>& /* x */)
{
  throw std::runtime_error("Ifpack2::SparsityFilter does not support leftScale.");
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::rightScale(const Tpetra::Vector<Scalar, LocalOrdinal, GlobalOrdinal, Node>& /* x */)
{
  throw std::runtime_error("Ifpack2::SparsityFilter does not support rightScale.");
}
 
//==========================================================================
template<class MatrixType>
void SparsityFilter<MatrixType>::apply(const Tpetra::MultiVector<Scalar,LocalOrdinal,GlobalOrdinal,Node> &X,
                                       Tpetra::MultiVector<Scalar,LocalOrdinal,GlobalOrdinal,Node> &Y,
                                       Teuchos::ETransp mode,
                                       Scalar /* alpha */,
                                       Scalar /* beta */) const
{
  // Note: This isn't AztecOO compliant.  But neither was Ifpack's version.
  // Note: The localized maps mean the matvec is trivial (and has no import)
  TEUCHOS_TEST_FOR_EXCEPTION(X.getNumVectors() != Y.getNumVectors(), std::runtime_error,
     "Ifpack2::SparsityFilter::apply ERROR: X.getNumVectors() != Y.getNumVectors().");
 
  Scalar zero = Teuchos::ScalarTraits<Scalar>::zero();
  Teuchos::ArrayRCP<Teuchos::ArrayRCP<const Scalar> > x_ptr = X.get2dView();
  Teuchos::ArrayRCP<Teuchos::ArrayRCP<Scalar> >       y_ptr = Y.get2dViewNonConst();
 
  Y.putScalar(zero);
  size_t NumVectors = Y.getNumVectors();
 
  for (size_t i = 0 ; i < NumRows_ ; ++i) {
    size_t Nnz;
    // Use this class's getrow to make the below code simpler
    getLocalRowCopy(i,Indices_(),Values_(),Nnz);
    if (mode==Teuchos::NO_TRANS){
      for (size_t j = 0 ; j < Nnz ; ++j)
        for (size_t k = 0 ; k < NumVectors ; ++k)
          y_ptr[k][i] += Values_[j] * x_ptr[k][Indices_[j]];
    }
    else if (mode==Teuchos::TRANS){
      for (size_t j = 0 ; j < Nnz ; ++j)
        for (size_t k = 0 ; k < NumVectors ; ++k)
          y_ptr[k][Indices_[j]] += Values_[j] * x_ptr[k][i];
    }
    else { //mode==Teuchos::CONJ_TRANS
      for (size_t j = 0 ; j < Nnz ; ++j)
        for (size_t k = 0 ; k < NumVectors ; ++k)
          y_ptr[k][Indices_[j]] += Teuchos::ScalarTraits<Scalar>::conjugate(Values_[j]) * x_ptr[k][i];
    }
  }
}
 
 
//==========================================================================
template<class MatrixType>
bool SparsityFilter<MatrixType>::hasTransposeApply() const
{
  return true;
}
 
//==========================================================================
template<class MatrixType>
bool SparsityFilter<MatrixType>::supportsRowViews() const
{
  return false;
}
 
//==========================================================================
template<class MatrixType>
typename SparsityFilter<MatrixType>::mag_type SparsityFilter<MatrixType>::getFrobeniusNorm() const
{
  throw std::runtime_error("Ifpack2::SparsityFilter does not implement getFrobeniusNorm.");
}
 
} // namespace Ifpack2
 
#define IFPACK2_SPARSITYFILTER_INSTANT(S,LO,GO,N)                            \
  template class Ifpack2::SparsityFilter< Tpetra::RowMatrix<S, LO, GO, N> >;
 
#endif