MueLu_AggregationStructuredAlgorithm_def.hpp

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#ifndef MUELU_AGGREGATIONSTRUCTUREDALGORITHM_DEF_HPP_
#define MUELU_AGGREGATIONSTRUCTUREDALGORITHM_DEF_HPP_
 
 
#include <Teuchos_Comm.hpp>
#include <Teuchos_CommHelpers.hpp>
 
#include <Xpetra_MapFactory.hpp>
#include <Xpetra_Map.hpp>
#include <Xpetra_CrsGraphFactory.hpp>
#include <Xpetra_CrsGraph.hpp>
 
#include "MueLu_AggregationStructuredAlgorithm_decl.hpp"
 
#include "MueLu_GraphBase.hpp"
#include "MueLu_Aggregates.hpp"
#include "MueLu_IndexManager.hpp"
#include "MueLu_Exceptions.hpp"
#include "MueLu_Monitor.hpp"
 
namespace MueLu {
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void AggregationStructuredAlgorithm<LocalOrdinal, GlobalOrdinal, Node>::
  BuildAggregates(const Teuchos::ParameterList& /* params */, const GraphBase& graph,
                  Aggregates& aggregates, std::vector<unsigned>& aggStat,
                  LO& numNonAggregatedNodes) const {
    Monitor m(*this, "BuildAggregates");
 
    RCP<Teuchos::FancyOStream> out;
    if(const char* dbg = std::getenv("MUELU_STRUCTUREDALGORITHM_DEBUG")) {
      out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
      out->setShowAllFrontMatter(false).setShowProcRank(true);
    } else {
      out = Teuchos::getFancyOStream(rcp(new Teuchos::oblackholestream()));
    }
 
    RCP<IndexManager> geoData = aggregates.GetIndexManager();
    const bool   coupled      = geoData->isAggregationCoupled();
    ArrayRCP<LO> vertex2AggId = aggregates.GetVertex2AggId()->getDataNonConst(0);
    ArrayRCP<LO> procWinner   = aggregates.GetProcWinner()  ->getDataNonConst(0);
    Array<LO>    ghostedCoarseNodeCoarseLIDs;
    Array<int>   ghostedCoarseNodeCoarsePIDs;
    Array<GO>    ghostedCoarseNodeCoarseGIDs;
 
    *out << "Extract data for ghosted nodes" << std::endl;
    geoData->getGhostedNodesData(graph.GetDomainMap(), ghostedCoarseNodeCoarseLIDs,
                                 ghostedCoarseNodeCoarsePIDs, ghostedCoarseNodeCoarseGIDs);
 
    LO rem, rate;
    Array<LO> ghostedIdx(3), coarseIdx(3);
    LO ghostedCoarseNodeCoarseLID, aggId;
    *out << "Loop over fine nodes and assign them to an aggregate and a rank" << std::endl;
    for(LO nodeIdx = 0; nodeIdx < geoData->getNumLocalFineNodes(); ++nodeIdx) {
      // Compute coarse ID associated with fine LID
      geoData->getFineNodeGhostedTuple(nodeIdx, ghostedIdx[0], ghostedIdx[1], ghostedIdx[2]);
 
      for(int dim = 0; dim < 3; ++dim) {
        coarseIdx[dim] = ghostedIdx[dim] / geoData->getCoarseningRate(dim);
        rem    = ghostedIdx[dim] % geoData->getCoarseningRate(dim);
        if(ghostedIdx[dim] - geoData->getOffset(dim)
           < geoData->getLocalFineNodesInDir(dim) - geoData->getCoarseningEndRate(dim)) {
          rate = geoData->getCoarseningRate(dim);
        } else {
          rate = geoData->getCoarseningEndRate(dim);
        }
        if(rem > (rate / 2)) {++coarseIdx[dim];}
        if(coupled && (geoData->getStartGhostedCoarseNode(dim)*geoData->getCoarseningRate(dim)
                       > geoData->getStartIndex(dim))) {--coarseIdx[dim];}
      }
 
      geoData->getCoarseNodeGhostedLID(coarseIdx[0], coarseIdx[1], coarseIdx[2],
                                       ghostedCoarseNodeCoarseLID);
 
      aggId                 = ghostedCoarseNodeCoarseLIDs[ghostedCoarseNodeCoarseLID];
      vertex2AggId[nodeIdx] = aggId;
      procWinner[nodeIdx]   = ghostedCoarseNodeCoarsePIDs[ghostedCoarseNodeCoarseLID];
      aggStat[nodeIdx]      = AGGREGATED;
      --numNonAggregatedNodes;
 
    } // Loop over fine points
  } // BuildAggregates()
 
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void AggregationStructuredAlgorithm<LocalOrdinal, GlobalOrdinal, Node>::
  BuildGraph(const GraphBase& graph, RCP<IndexManager>& geoData, const LO dofsPerNode,
             RCP<CrsGraph>& myGraph, RCP<const Map>& coarseCoordinatesFineMap,
             RCP<const Map>& coarseCoordinatesMap) const {
    Monitor m(*this, "BuildGraphP");
 
    RCP<Teuchos::FancyOStream> out;
    if(const char* dbg = std::getenv("MUELU_STRUCTUREDALGORITHM_DEBUG")) {
      out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
      out->setShowAllFrontMatter(false).setShowProcRank(true);
    } else {
      out = Teuchos::getFancyOStream(rcp(new Teuchos::oblackholestream()));
    }
 
    const bool coupled = geoData->isAggregationCoupled();
 
    // Compute the number of coarse points needed to interpolate quantities to a fine point
    int numInterpolationPoints = 0;
    if(geoData->getInterpolationOrder() == 0) {
      numInterpolationPoints = 1;
    } else if(geoData->getInterpolationOrder() == 1) {
      // Compute 2^numDimensions using bit logic to avoid round-off errors
      numInterpolationPoints = 1 << geoData->getNumDimensions();
    }
    *out << "numInterpolationPoints=" << numInterpolationPoints << std::endl;
 
    Array<LO> colIndex((geoData->getNumLocalCoarseNodes() + numInterpolationPoints*
                        (geoData->getNumLocalFineNodes() - geoData->getNumLocalCoarseNodes()))*dofsPerNode);
    Array<size_t> rowPtr(geoData->getNumLocalFineNodes()*dofsPerNode + 1);
    rowPtr[0] = 0;
    ArrayRCP<size_t> nnzOnRow(geoData->getNumLocalFineNodes()*dofsPerNode);
 
    *out << "Compute prolongatorGraph data" << std::endl;
    if(geoData->getInterpolationOrder() == 0) {
      ComputeGraphDataConstant(graph, geoData, dofsPerNode, numInterpolationPoints,
                               nnzOnRow, rowPtr, colIndex);
    } else if(geoData->getInterpolationOrder() == 1) {
      ComputeGraphDataLinear(graph, geoData, dofsPerNode, numInterpolationPoints,
                             nnzOnRow, rowPtr, colIndex);
    }
 
    // Compute graph's rowMap, colMap and domainMap
    RCP<Map> rowMap = MapFactory::Build(graph.GetDomainMap(), dofsPerNode);
    RCP<Map> colMap, domainMap;
    *out << "Compute domain and column maps of the CrsGraph" << std::endl;
    if(coupled){
      *out << "Extract data for ghosted nodes" << std::endl;
      Array<LO>  ghostedCoarseNodeCoarseLIDs;
      Array<int> ghostedCoarseNodeCoarsePIDs;
      Array<GO>  ghostedCoarseNodeCoarseGIDs;
      geoData->getGhostedNodesData(graph.GetDomainMap(), ghostedCoarseNodeCoarseLIDs,
                                   ghostedCoarseNodeCoarsePIDs, ghostedCoarseNodeCoarseGIDs);
 
      // In this case we specify the global number of nodes on the coarse mesh
      // as well as the GIDs needed on rank.
      colMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                 geoData->getNumGlobalCoarseNodes(),
                                 ghostedCoarseNodeCoarseGIDs(),
                                 graph.GetDomainMap()->getIndexBase(),
                                 graph.GetDomainMap()->getComm());
 
      LO coarseNodeIdx = 0;
      Array<GO> coarseNodeCoarseGIDs, coarseNodeFineGIDs;
      geoData->getCoarseNodesData(graph.GetDomainMap(), coarseNodeCoarseGIDs, coarseNodeFineGIDs);
      for(LO nodeIdx = 0; nodeIdx < ghostedCoarseNodeCoarseGIDs.size(); ++nodeIdx) {
        if(ghostedCoarseNodeCoarsePIDs[nodeIdx] == colMap->getComm()->getRank()) {
          coarseNodeCoarseGIDs[coarseNodeIdx] = ghostedCoarseNodeCoarseGIDs[nodeIdx];
          ++coarseNodeIdx;
        }
      }
      domainMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                    geoData->getNumGlobalCoarseNodes(),
                                    coarseNodeCoarseGIDs(),
                                    graph.GetDomainMap()->getIndexBase(),
                                    graph.GetDomainMap()->getComm());
      coarseCoordinatesMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                               geoData->getNumGlobalCoarseNodes(),
                                               coarseNodeCoarseGIDs(),
                                               graph.GetDomainMap()->getIndexBase(),
                                               graph.GetDomainMap()->getComm());
      coarseCoordinatesFineMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                                   geoData->getNumGlobalCoarseNodes(),
                                                   coarseNodeFineGIDs(),
                                                   graph.GetDomainMap()->getIndexBase(),
                                                   graph.GetDomainMap()->getComm());
    } else {
      // In this case the map will compute the global number of nodes on the coarse mesh
      // and it will assign GIDs to the local coarse nodes.
      colMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                 Teuchos::OrdinalTraits<GO>::invalid(),
                                 geoData->getNumLocalCoarseNodes()*dofsPerNode,
                                 graph.GetDomainMap()->getIndexBase(),
                                 graph.GetDomainMap()->getComm());
      domainMap = colMap;
 
      Array<GO> coarseNodeCoarseGIDs(geoData->getNumLocalCoarseNodes());
      Array<GO> coarseNodeFineGIDs(geoData->getNumLocalCoarseNodes());
      geoData->getCoarseNodesData(graph.GetDomainMap(), coarseNodeCoarseGIDs, coarseNodeFineGIDs);
      coarseCoordinatesMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                               Teuchos::OrdinalTraits<GO>::invalid(),
                                               geoData->getNumLocalCoarseNodes(),
                                               graph.GetDomainMap()->getIndexBase(),
                                               graph.GetDomainMap()->getComm());
      coarseCoordinatesFineMap = MapFactory::Build(graph.GetDomainMap()->lib(),
                                                   Teuchos::OrdinalTraits<GO>::invalid(),
                                                   coarseNodeFineGIDs(),
                                                   graph.GetDomainMap()->getIndexBase(),
                                                   graph.GetDomainMap()->getComm());
    }
 
    *out << "Call constructor of CrsGraph" << std::endl;
    myGraph = CrsGraphFactory::Build(rowMap,
                                     colMap,
                                     nnzOnRow,
                                     Xpetra::StaticProfile);
 
    *out << "Fill CrsGraph" << std::endl;
    LO rowIdx = 0;
    for(LO nodeIdx = 0; nodeIdx < geoData->getNumLocalFineNodes(); ++nodeIdx) {
      for(LO dof = 0; dof < dofsPerNode; ++dof) {
        rowIdx = nodeIdx*dofsPerNode + dof;
        myGraph->insertLocalIndices(rowIdx, colIndex(rowPtr[rowIdx], nnzOnRow[rowIdx]) );
      }
    }
 
    *out << "Call fillComplete on CrsGraph" << std::endl;
    myGraph->fillComplete(domainMap, rowMap);
    *out << "Prolongator CrsGraph computed" << std::endl;
 
  } // BuildAggregates()
 
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void AggregationStructuredAlgorithm<LocalOrdinal, GlobalOrdinal, Node>::
  ComputeGraphDataConstant(const GraphBase& graph, RCP<IndexManager>& geoData,
                           const LO dofsPerNode, const int /* numInterpolationPoints */,
                           ArrayRCP<size_t>& nnzOnRow, Array<size_t>& rowPtr,
                           Array<LO>& colIndex) const {
 
    RCP<Teuchos::FancyOStream> out;
    if(const char* dbg = std::getenv("MUELU_STRUCTUREDALGORITHM_DEBUG")) {
      out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
      out->setShowAllFrontMatter(false).setShowProcRank(true);
    } else {
      out = Teuchos::getFancyOStream(rcp(new Teuchos::oblackholestream()));
    }
 
    Array<LO>    ghostedCoarseNodeCoarseLIDs;
    Array<int>   ghostedCoarseNodeCoarsePIDs;
    Array<GO>    ghostedCoarseNodeCoarseGIDs;
    geoData->getGhostedNodesData(graph.GetDomainMap(), ghostedCoarseNodeCoarseLIDs,
                                 ghostedCoarseNodeCoarsePIDs, ghostedCoarseNodeCoarseGIDs);
 
    LO ghostedCoarseNodeCoarseLID, rem, rate;
    Array<LO> ghostedIdx(3), coarseIdx(3);
    for(LO nodeIdx = 0; nodeIdx < geoData->getNumLocalFineNodes(); ++nodeIdx) {
 
      // Compute coarse ID associated with fine LID
      geoData->getFineNodeGhostedTuple(nodeIdx, ghostedIdx[0], ghostedIdx[1], ghostedIdx[2]);
 
      for(int dim = 0; dim < 3; ++dim) {
        coarseIdx[dim] = ghostedIdx[dim] / geoData->getCoarseningRate(dim);
        rem    = ghostedIdx[dim] % geoData->getCoarseningRate(dim);
        if(ghostedIdx[dim] - geoData->getOffset(dim)
           < geoData->getLocalFineNodesInDir(dim) - geoData->getCoarseningEndRate(dim)) {
          rate = geoData->getCoarseningRate(dim);
        } else {
          rate = geoData->getCoarseningEndRate(dim);
        }
        if(rem > (rate / 2)) {++coarseIdx[dim];}
        if( (geoData->getStartGhostedCoarseNode(dim)*geoData->getCoarseningRate(dim)
             > geoData->getStartIndex(dim)) && geoData->isAggregationCoupled() ) {--coarseIdx[dim];}
      }
 
      geoData->getCoarseNodeGhostedLID(coarseIdx[0], coarseIdx[1], coarseIdx[2],
                                       ghostedCoarseNodeCoarseLID);
 
      for(LO dof = 0; dof < dofsPerNode; ++dof) {
        nnzOnRow[nodeIdx*dofsPerNode + dof]         = 1;
        rowPtr[nodeIdx*dofsPerNode + dof + 1]       = rowPtr[nodeIdx*dofsPerNode + dof] + 1;
        colIndex[rowPtr[nodeIdx*dofsPerNode + dof]] =
          ghostedCoarseNodeCoarseLIDs[ghostedCoarseNodeCoarseLID]*dofsPerNode + dof;
      }
    } // Loop over fine points
 
  } // ComputeGraphDataConstant()
 
 
  template <class LocalOrdinal, class GlobalOrdinal, class Node>
  void AggregationStructuredAlgorithm<LocalOrdinal, GlobalOrdinal, Node>::
  ComputeGraphDataLinear(const GraphBase& /* graph */, RCP<IndexManager>& geoData,
                         const LO dofsPerNode, const int numInterpolationPoints,
                         ArrayRCP<size_t>& nnzOnRow, Array<size_t>& rowPtr,
                         Array<LO>& colIndex) const {
 
    RCP<Teuchos::FancyOStream> out;
    if(const char* dbg = std::getenv("MUELU_STRUCTUREDALGORITHM_DEBUG")) {
      out = Teuchos::fancyOStream(Teuchos::rcpFromRef(std::cout));
      out->setShowAllFrontMatter(false).setShowProcRank(true);
    } else {
      out = Teuchos::getFancyOStream(rcp(new Teuchos::oblackholestream()));
    }
 
    const bool coupled       = geoData->isAggregationCoupled();
    const int  numDimensions = geoData->getNumDimensions();
    Array<LO> ghostedIdx(3,0);
    Array<LO> coarseIdx(3,0);
    Array<LO> ijkRem(3,0);
    const LO coarsePointOffset[8][3] = {{0, 0, 0}, {1, 0, 0}, {0, 1, 0}, {1, 1, 0},
                                        {0, 0, 1}, {1, 0, 1}, {0, 1, 1}, {1, 1, 1}};
 
    for(LO nodeIdx = 0; nodeIdx < geoData->getNumLocalFineNodes(); ++nodeIdx) {
 
      // Compute coarse ID associated with fine LID
      geoData->getFineNodeGhostedTuple(nodeIdx, ghostedIdx[0], ghostedIdx[1], ghostedIdx[2]);
      for(int dim=0; dim < numDimensions; dim++){
        coarseIdx[dim] = ghostedIdx[dim] / geoData->getCoarseningRate(dim);
        ijkRem[dim]    = ghostedIdx[dim] % geoData->getCoarseningRate(dim);
        if(coupled) {
          if (geoData->getStartGhostedCoarseNode(dim)*geoData->getCoarseningRate(dim)
                       > geoData->getStartIndex(dim)) {
            --coarseIdx[dim];
          }
        } else {
          if(ghostedIdx[dim] == geoData->getLocalFineNodesInDir(dim) - 1) {
            coarseIdx[dim] = geoData->getLocalCoarseNodesInDir(dim) - 1;
          }
        }
      }
 
      // Fill Graph
      // Check if Fine node lies on Coarse Node
      bool allCoarse = true;
      Array<bool> isCoarse(numDimensions);
      for(int dim = 0; dim < numDimensions; ++dim) {
        isCoarse[dim] = false;
        if(ijkRem[dim] == 0)
          isCoarse[dim] = true;
 
        if(coupled){
          if( ghostedIdx[dim]-geoData->getOffset(dim) == geoData->getLocalFineNodesInDir(dim)-1 &&
              geoData->getMeshEdge(dim*2+1) )
            isCoarse[dim] = true;
        } else {
          if( ghostedIdx[dim]-geoData->getOffset(dim) == geoData->getLocalFineNodesInDir(dim)-1)
            isCoarse[dim] = true;
        }
 
        if(!isCoarse[dim])
          allCoarse = false;
      }
 
      LO rowIdx = 0, colIdx = 0;
      if(allCoarse) {
        for(LO dof = 0; dof < dofsPerNode; ++dof) {
          rowIdx = nodeIdx*dofsPerNode + dof;
          nnzOnRow[rowIdx] = 1;
          rowPtr[rowIdx + 1] = rowPtr[rowIdx] + 1;
 
          // Fine node lies on Coarse node, easy case, we only need the LID of the coarse node.
          geoData->getCoarseNodeGhostedLID(coarseIdx[0], coarseIdx[1], coarseIdx[2], colIdx);
          colIndex[rowPtr[rowIdx]] = colIdx*dofsPerNode + dof;
        }
      } else {
        // Harder case, we need the LIDs of all the coarse nodes contributing to the interpolation
        for(int dim = 0; dim < numDimensions; ++dim) {
          if(coarseIdx[dim] == geoData->getGhostedNodesInDir(dim) - 1)
            --coarseIdx[dim];
        }
 
        for(LO dof = 0; dof < dofsPerNode; ++dof) {
          // at the current node.
          rowIdx = nodeIdx*dofsPerNode + dof;
          nnzOnRow[rowIdx] = Teuchos::as<size_t>( numInterpolationPoints );
          rowPtr[rowIdx + 1] = rowPtr[rowIdx] + Teuchos::as<LO>(numInterpolationPoints);
          // Compute Coarse Node LID
          for(LO interpIdx = 0; interpIdx < numInterpolationPoints; ++interpIdx) {
            geoData->getCoarseNodeGhostedLID(coarseIdx[0] + coarsePointOffset[interpIdx][0],
                                             coarseIdx[1] + coarsePointOffset[interpIdx][1],
                                             coarseIdx[2] + coarsePointOffset[interpIdx][2],
                                             colIdx);
            colIndex[rowPtr[rowIdx] + interpIdx] = colIdx*dofsPerNode + dof;
          } // Loop over numInterpolationPoints
        } // Loop over dofsPerNode
      }
    } // Loop over fine points
  } // ComputeGraphDataLinear()
 
} // end namespace
 
 
#endif /* MUELU_AGGREGATIONSTRUCTUREDALGORITHM_DEF_HPP_ */