# CLIPSeqTools


## Summary
CLIPSeqTools is a collection of scripts that can be used for the analysis of CLIP-Seq data.
The toolbox is primarily oriented for bioinfromaticians but we try to make it a simple as possible so that even biologists with a little bit of command line background could run most of the analysis.

## Installation
* **Using CPAN** - Not yet supported
  1. If you have cpanm installed. `cpanm CLIPSeqTools`.
  2. If you do not have cpanm. See [here](http://www.cpan.org/modules/INSTALL.html).
* **Using Git** - Preferred so you may contribute
  1. Install git ([directions](http://git-scm.com/downloads)).
  2. Install dependencies (listed below) from CPAN. [How to install CPAN modules](http://www.cpan.org/modules/INSTALL.html).
  3. Clone the repository on your machine
     `git clone https://github.com/palexiou/GenOO-CLIP.git`.

## Dependencies (maybe not exhaustive)
* GenOO
* Pod::Usage
* Modern::Perl

## State
The toolbox is under heavy development and functionality is added regularly.
Consider it unstable.

## Copyright
Copyright (c) 2014 Emmanouil "Manolis" Maragkakis and Panagiotis Alexiou.

## License
This library is free software and may be distributed under the same terms as perl itself.

This library is distributed in the hope that it will be useful, but **WITHOUT ANY WARRANTY**; without even the implied warranty of merchantability or fitness for a particular purpose.