align_config_aligned_ends.hpp File Reference

Provides seqan3::align_cfg::aligned_ends. More...

#include <type_traits>
#include <tuple>
#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/core/algorithm/pipeable_config_element.hpp>
#include <seqan3/core/detail/pack_algorithm.hpp>
#include <seqan3/core/type_traits/basic.hpp>
#include <seqan3/core/type_traits/template_inspection.hpp>

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Classes
struct	seqan3::align_cfg::aligned_ends< end_gaps_t >
	The configuration for aligned sequence ends. More...
struct	seqan3::back_end_first< value_t >
	The penalty configuration for aligning the back of the first sequence with a gap. More...
struct	seqan3::back_end_second< value_t >
	The penalty configuration for aligning the back of the second sequence with a gap. More...
class	seqan3::end_gaps< ends_t >
	Wraps the sequence end-gap specifiers and provides ordered access to the respective values. More...
struct	seqan3::front_end_first< value_t >
	The penalty configuration for aligning the front of the first sequence with a gap. More...
struct	seqan3::front_end_second< value_t >
	The penalty configuration for aligning the front of the second sequence with a gap. More...
struct	seqan3::sequence_end_gap_specifier_base< value_t, _is_static, _value >
	A mixin class which can maintain a static or a dynamic bool state. More...

Namespaces
	seqan3
	The main SeqAn3 namespace.
	seqan3::align_cfg
	A special sub namespace for the alignment configurations.

Detailed Description

Provides seqan3::align_cfg::aligned_ends.

Author

Jörg Winkler <j.winkler AT fu-berlin.de>

Rene Rahn <rene.rahn AT fu-berlin.de>